MmuEX6057976 @ mm9
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38279610-38281522:+
Coord C1 exon
chr13:38279610-38279772
Coord A exon
chr13:38280319-38280402
Coord C2 exon
chr13:38281415-38281522
Length
84 bp
Sequences
Splice sites
3' ss Seq
AAATATTTCATTCTGTATAGAAC
3' ss Score
5.13
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATTGTGGGACCTGGAGAAACAAATCAAACAACTGAGGAATTATCGGGACAACTATCAGAGCTTCTGCAAGTGGCTATATGATGCCAAACGCCGCCAGGACTCTTTAGAGTCCATGAAGTTTGGAGATTCCAACACAGTCATGCGGTTTTTGAATGAGCAGAAG
Seq A exon
AACCTGCACAGTGAAATATCTGGCAAACGAGACAAATCAGAAGAAGTGCATAAAATCGCTGAACTTTGCGCAAACTCAATTAAG
Seq C2 exon
GATTATGAACTGCAGCTGGCATCGTACACCTCAGGGCTGGAAACTCTACTGAACATACCTATCAAGAGGACCATGGTTCAGTCCCCATCCGGGGTGATTCTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATATGATGCCAAACGCCGCC
R:
GGGACTGAACCATGGTCCTCT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: