RnoEX6053436 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27295552-27297206:-
Coord C1 exon
chr17:27297044-27297206
Coord A exon
chr17:27296393-27296476
Coord C2 exon
chr17:27295552-27295659
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAATATTTTATCCTGTATAGAAC
3' ss Score
6.06
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTGTGGGACCTGGAGAAACAAATCAAACAACTGAGGAATTATCGTGACAACTATCAGAGCTTCTGCAAGTGGCTGTATGATGCCAAACGCCGCCAGGACTCTTTGGAGTCCATGAAGTTCGGAGATTCCAACACAGTCATGCGGTTTTTGAATGAGCAGAAG
Seq A exon
AACCTGCACAATGAAATATCTGGCAAACGGGATAAATCAGAAGAAGTACATAAAATTGCTGAGCTTTGCGCAAACTCAATTAAG
Seq C2 exon
GATTATGAACTCCAGCTGGCGTCATACACCTCAGGGCTGGAAACTCTACTGAACATACCTATTAAGAGGACCATGGTTCAGTCCCCATCTGGGGTAATTCTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATGATGCCAAACGCC
R:
GGGACTGAACCATGGTCCTCT
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]