MmuEX6057976 @ mm10
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38187741-38189653:+
Coord C1 exon
chr13:38187741-38187903
Coord A exon
chr13:38188450-38188533
Coord C2 exon
chr13:38189546-38189653
Length
84 bp
Sequences
Splice sites
3' ss Seq
AAATATTTCATTCTGTATAGAAC
3' ss Score
5.13
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATTGTGGGACCTGGAGAAACAAATCAAACAACTGAGGAATTATCGGGACAACTATCAGAGCTTCTGCAAGTGGCTATATGATGCCAAACGCCGCCAGGACTCTTTAGAGTCCATGAAGTTTGGAGATTCCAACACAGTCATGCGGTTTTTGAATGAGCAGAAG
Seq A exon
AACCTGCACAGTGAAATATCTGGCAAACGAGACAAATCAGAAGAAGTGCATAAAATCGCTGAACTTTGCGCAAACTCAATTAAG
Seq C2 exon
GATTATGAACTGCAGCTGGCATCGTACACCTCAGGGCTGGAAACTCTACTGAACATACCTATCAAGAGGACCATGGTTCAGTCCCCATCCGGGGTGATTCTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATATGATGCCAAACGCCGCC
R:
GGGACTGAACCATGGTCCTCT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types