DreEX6047624 @ danRer10
Exon Skipping
Gene
ENSDARG00000076673 | DSP (2 of 2)
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr20:53055561-53061531:-
Coord C1 exon
chr20:53061369-53061531
Coord A exon
chr20:53059269-53059352
Coord C2 exon
chr20:53055561-53055668
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTATAATGTGTGCAGGCA
3' ss Score
6.01
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCTGGTTGATCTGGACTCTTACCTGCCGCAGCTGAAGCGATACATGCAGTCCAGTTCTCAGCTGAGCGGCTGGATTGATGAAACCCAGAAACAGATTGATTCACAACACTCCGTCAAGATGGAGGACAGCGCAGCTTACACTCAACTACTGAACCAGCAGAAG
Seq A exon
GCATTAAACTCTGATATAAAGGCGAAGAGAGAGCTGATGGAGACGGTGCACAAAGACGGAGAAACCTGCATCAGTGCCATCAAG
Seq C2 exon
AATTACGAGCTTGAGTTGGCCACTTACAGCGCTGGACTGGAGACTCTGCTCAACATCCCGATCAAGAGGACCGTTCTGCAGTCTCCATCATCCTCCATCGCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076673-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(49.4=80.0)
A:
PF0043516=Spectrin=FE(30.3=100)
C2:
PF0043516=Spectrin=PD(16.9=41.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGATTGATGAAACCCA
R:
ACTGCAGAACGGTCCTCTTGA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]