GgaEX6020317 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64620763-64622546:-
Coord C1 exon
chr2:64622384-64622546
Coord A exon
chr2:64621728-64621811
Coord C2 exon
chr2:64620763-64620870
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCTCACTTTTTTCTTGACAGAAC
3' ss Score
8.32
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATCATGGGATTTAGAAAGACAGATCAAACAGCTGAAAACGTACCGGGATCTATATCAGGCTCTGTGCAAATGGATCTGTGATGCCAAGCGCAGGCAGGATTCTATTGAGTCCACAAAGCTGTGTGATTCCAACACTATTATGAGATATCTACATGATCAGAAG
Seq A exon
AACTTGCACAGTGAAATCTGTGGGAAGCGAGACAAAGTTGAAGAGCTTCTCAAGCATGCAGATCAGTGCTCAGCTGCAATTAAG
Seq C2 exon
GATTATGAGCTTCAGGTTGCTTCCTACAGTTCTGGATTAGAAACGTTGCTCAACATACCTATCAAGAAGTGTGTGGTTCAGTCTCCAGCAGTGCTGATTCTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATCTGTGATGCCAAGCG
R:
GCTGGAGACTGAACCACACAC
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]