DreEX6033724 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53236861-53238651:-
Coord C1 exon
chr1:53238518-53238651
Coord A exon
chr1:53238272-53238440
Coord C2 exon
chr1:53236861-53236944
Length
169 bp
Sequences
Splice sites
3' ss Seq
AACTTTATTTTTGTTCTCAGGCT
3' ss Score
8.34
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
TTCTGGCAGCATAACAAATGGATGGATGTGGTGGTGGACGACAGGCTCCCGTGTGTGAGAGACAAACTGGTGTTCCTCCACTCCGCTGACAACAACGAGTTCTGGAGTGCACTGCTGGAAAAGGCCTATGCCAA
Seq A exon
GCTGAACGGCAGCTATGAAGCCCTGAAAGGTGGAAGCACAATGGAGGCCATGGAGGACTTTACTGGAGGTGTGGGTGAGATGTACGAGACGAAAAACGGACCCAACAACCTCTTCCTCATCCTCAAGAAAGCCATAGAGAGGGGGTCCATGCTTGGCTGCTCCATCGAC
Seq C2 exon
ATCACTAGTTCTGCTGAATCTGAAGCCCAAACCTCTACTGGTCTGGTGAAAGGCCACGCTTACTCCGTCACTGGAGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.036
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.9=100)
A:
PF0064816=Peptidase_C2=FE(18.9=100)
C2:
PF0064816=Peptidase_C2=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGCATAACAAATGGA
R:
ACGGAGTAAGCGTGGCCTTTC
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]