GgaEX1012827 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39822008-39824131:+
Coord C1 exon
chr3:39822008-39822141
Coord A exon
chr3:39822724-39822892
Coord C2 exon
chr3:39824048-39824131
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTTAACATGTGTTTTCCAGGCT
3' ss Score
7.24
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TTCTGGCAGCACAATGAGTGGCTGGATGTTGTGATTGATGATCGATTGCCCACCTTCAAAGACCGGTTGGTATTCGTACATTCAGCAGAACACAATGAATTTTGGAGTGCTTTACTAGAGAAAGCCTATGCCAA
Seq A exon
GCTGAATGGCAGCTATGAGGCTCTGAAAGGAGGCAGTACAATAGAAGCCATGGAGGATTTCACTGGGGGAGTGGGAGAAATGTATGAGGTTAAAAAAGCTCCTGACAATTTCTATGAAATCCTAGAGAAAGCTCTGAAAAGATCGTCAATGGTGGGCTGCTCTATCGAT
Seq C2 exon
ACCAGCAGTGCTGCAGAGTCAGAAGCCAGGACACCCTTTGGCCTCATAAAAGGCCATGCTTACTCTGTAACCGGCATTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.9=100)
A:
PF0064816=Peptidase_C2=FE(18.9=100)
C2:
PF0064816=Peptidase_C2=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGCACAATGAGT
R:
CTCATCAATGCCGGTTACAGAGT
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]