DreEX6034386 @ danRer10
Exon Skipping
Gene
ENSDARG00000101816 | col5a3b
Description
collagen, type V, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-110728-4]
Coordinates
chr1:58545607-58548826:-
Coord C1 exon
chr1:58548758-58548826
Coord A exon
chr1:58548303-58548536
Coord C2 exon
chr1:58545607-58546144
Length
234 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGTTC
3' ss Score
8.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGAAAATGGCTTCATGGAGCAAAGAGAAGCCCGGAACCTGGTTCAGCACGTTCAAGAAGGGCTCACAG
Seq A exon
TTCTCCTATGTGGATGTGGATGGAAACCCTGTTCATGTGGTGCAGCTGGGCTTCCTGAAGCTGTTGAGTGCGACGGCGCGTCAGAGCTTCACGTATGTGTGTCAGAACTCTGCCGGCTGGCTGGACGGATCCACGCGCAGCTACACACACGCACTGCGCTTCAGGGGCAGCAACGGAGACGAGCTGACGCAGCGCAACACACACTACATACAGCCCACGCATGACGGCTGCCAG
Seq C2 exon
TGGCGTTCGGGGCAGGAGCGCACTGTTCTCCAGCTGGATGCCCCGCTGCCGGATGTTCTGCCGCTGCTGGACGTCTCGGTGTCGGACTTCGGAAGCTTGAAGCAGAAGTTTGGCTTCAGCGTGGGGCAGGTTTGCTTCAGCGGCTAGTAAACACAGACTGACACAGACCATCTATTTATACCGCAGTCCTCAGCCGCTCATCCGCTAACAGGAAGCTGAGCGCCAAGGCTGATCATGTGACATGTCCGTTTACCCAATCAGACCTCTCACAGACTCACATGTATTGTGCTGTTGTTTTAAAGATGTATTTTTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATCTTGGTGCTACACGAGGCTGTATTTTAACTTGTTTACATGATGTATTGAGCTCTGTGTGAAGCAGTGCATTCTGGGAAGAGGCGTCAGTAAGGGTGTATAGTATGGAGATTCCCGAGTGTCTTGTTGATAAATATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101816-'68-69,'68-68,69-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.3=100)
C2:
PF0141013=COLFI=PD(21.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAAGAGAAGCCCGGAAC
R:
TGTCACATGATCAGCCTTGGC
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]