RnoEX6034759 @ rn6
Exon Skipping
Gene
ENSRNOG00000020525 | Col5a3
Description
collagen type V alpha 3 chain [Source:RGD Symbol;Acc:70922]
Coordinates
chr8:21786324-21787977:-
Coord C1 exon
chr8:21787909-21787977
Coord A exon
chr8:21787341-21787580
Coord C2 exon
chr8:21786324-21787250
Length
240 bp
Sequences
Splice sites
3' ss Seq
CCTACCTTGCCCTGCCACAGTTC
3' ss Score
6.16
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GTGAAACTGGCCTCCTGGTCCCGAGAAAAGCCTGGAGGTTGGTACAGCACCTTCCGCCGAGGGAAGAAG
Seq A exon
TTCTCCTATGTGGATGCTGACGGCTCCCCGGTGAATGTGGTCCAGTTGACCTTCCTGAAGTTGTTGAGCGCTGCAGCCCATCAGAGGTTCACTTACACCTGCCAGAACTCCGCAGCATGGCTGGACGAAGCTTCAGGTGACCACAGGCACTCTATCCGCTTCCAAGGGACCAACTGGGAAGAGTTGTCCTTCAACCAGACAACAGCAGCCACCATCAAGGTCCCCCATGATGGCTGCCGG
Seq C2 exon
GTCCGGAAGGGACAGGCGAAGACCCTCTTTGAATTCAGCTCTTCTGTGGGCTTTCTGCCTCTGTGGGATGTGGCCGCCGTTGACTTTGGCCAGACGAACCAGAAGTTTGGGTTTGAACTTGGCTCCGTCTGCTTTAGCAGCTGAGTTTTGGAGGTGGGAAGGAAGCTAAAGGGAGCCCCATGTGGGGCTATGTGGTGCTGAGGCTTTGAGGCCATTCTATTTATCACCAGGGAACTCTAGATCCAGGGTTGTGTGACTCTGAGTATTCTTCCTCCCTTGTAGGGGTGAGGGTGGAGAGCCCAGCTTCTTCTGTCTATTCATCCCGGGTGGCACACCCAACTGTCCGCTGGCTTCTTCCCTCCACCCAACCATTCATTGCCTACTCCCACCCCCAGACCTCCATACAGTATAGACTTATAACTCAGAGCTGATGAAGCCCCACCCCTGCCTCTCCACCCCTCCACCAGGCCCTTTGGTGCTATCCCTTTCCATAGTTAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020525-'82-87,'82-86,83-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.3=100)
A:
PF0141013=COLFI=FE(37.1=100)
C2:
PF0141013=COLFI=PD(20.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTTGGTACAGCACCTT
R:
TCAGAGTCACACAACCCTGGA
Band lengths:
299-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]