MmuEX6064225 @ mm10
Exon Skipping
Gene
ENSMUSG00000004098 | Col5a3
Description
collagen, type V, alpha 3 [Source:MGI Symbol;Acc:MGI:1858212]
Coordinates
chr9:20770050-20771655:-
Coord C1 exon
chr9:20771587-20771655
Coord A exon
chr9:20771071-20771310
Coord C2 exon
chr9:20770050-20770978
Length
240 bp
Sequences
Splice sites
3' ss Seq
CCTACCTTGCCCCACTGCAGTTC
3' ss Score
6.38
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTGAAACTGGCCTCGTGGTCCCGAGAGAAGCCTGGAGGCTGGTACAGCACCTTCCGCCGAGGGAAGAAG
Seq A exon
TTCTCCTATGTGGATGCTGATGGCTCCCCGGTGAATGTGGTCCAGTTGACCTTCCTGAAGTTGTTGAGTGCTGCAGCCCATCAGAGGTTCACTTACATCTGCCAGAACTCGGTGGCATGGCTGGATGAAGCTGCGGGTGACCACAGGCACTCCATCCGCTTCCAAGGGACCAACTGGGAAGAGTTGTCCTTCAACCAGACAACAGCAGCTACCATCAAGGTCTCCCATGATGGCTGTCGG
Seq C2 exon
GTCCGGAAGGGACAGGCGAAGACCCTCTTTGAATTCAGCTCTTCTGTGGGTTTCCTGCCTCTGTGGGATGTGGCTGCCTCTGACTTTGGTCAGACGAACCAAAAGTTTGGGTTTGAACTCGGCTCCATCTGCTTTAGCAGCTGAAGTTGTGAGGTGGGAAGGAAGCTGAAGGGAGCCCCACATGGGCTCCTTGGTGCTGAGGCTCTGAGGCCATTCTGTTTATCCCCAGGGACTCCAGATCCAGGGTCACGTGACTCTGACTATTCTTTCTCCCTTGTAGGGGGAGAGTGTGGAGAGCCCAGCTCCCTCTGTCTGTTCACCCCAGGTGGTATACCCAGTTGTCTGCTAGCTCCCCCCTCCATCCAACTGTCCATTGTCCACCTCACCCCCAGACCTCCATGCAGTAGACTTTTAACTCAGAGCTGGTGAAGCCCCACCCCTGCCTCTCCACCCCTCCACCAGGCCTTTTGGTGCTATTCCTTTCCATAGTTGAGCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004098-'84-89,'84-88,85-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.3=100)
A:
PF0141013=COLFI=FE(37.1=100)
C2:
PF0141013=COLFI=PD(20.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGAGAGAAGCCTGGAG
R:
AGTCACGTGACCCTGGATCTG
Band lengths:
308-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types