HsaEX6092771 @ hg19
Exon Skipping
Gene
ENSG00000080573 | COL5A3
Description
collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:14864]
Coordinates
chr19:10070237-10073563:-
Coord C1 exon
chr19:10073495-10073563
Coord A exon
chr19:10071327-10071566
Coord C2 exon
chr19:10070237-10071233
Length
240 bp
Sequences
Splice sites
3' ss Seq
CCTTGCCCTCCTCTCACCAGTTC
3' ss Score
9.95
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTGAAATTGGCCTCCTGGTCCAAGGAAAAGCCTGGAGGCTGGTATAGCACATTCCGTCGAGGGAAGAAG
Seq A exon
TTCTCCTACGTGGACGCCGACGGGTCCCCAGTGAATGTCGTGCAGCTGAACTTCCTGAAACTGCTGAGTGCCACAGCTCGCCAGAACTTCACCTACTCCTGCCAGAATGCAGCTGCCTGGCTGGACGAAGCCACGGGTGACTACAGCCACTCCGCCCGCTTCCTTGGCACCAATGGAGAGGAGCTGTCTTTCAACCAGACGACAGCAGCCACTGTCAGCGTCCCCCAGGATGGCTGCCGG
Seq C2 exon
CTCCGGAAAGGACAGACGAAGACCCTTTTCGAATTCAGCTCTTCTCGAGCGGGATTTCTGCCCCTGTGGGATGTGGCGGCCACTGACTTTGGCCAGACGAACCAAAAGTTTGGGTTTGAACTGGGCCCCGTCTGCTTCAGCAGCTGAGAGTGTCCGGGGTGGGAGGGACCATGAGGGAGCCCCAGAATGGGGTGCATTTGGTGCTGAGGCTTTGAAGCCACCGTATTTTTCGTTACCTGTGACTATGGAGCCAATGGGATGTGACTTCGCTCATCACGGACAGTCATTCCTTCTCCTTTCCAGGGTGCTGGGGGCTGGGGTTCCCTGGCCCAAGGGTCCAGCCTCCTCTCACCCCATTCCAGGTGGCATACTGCAGTCTGGCTCTTTCTCCCCTCCCTCCCCACCCAAGCCTCACCTCCCCACCCCTTGAACCCCCATGCAATGAGCTTCTAACTCAGAGCTGATGAACAAAAGCCCCCCCACCCCCAATGCCTGCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080573-'66-67,'66-66,67-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.3=100)
A:
PF0141013=COLFI=FE(36.9=100)
C2:
PF0141013=COLFI=PD(21.0=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCACATTCCGTCGAGGGA
R:
CCGTGATGAGCGAAGTCACAT
Band lengths:
305-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)