DreEX6037450 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36631586-36644591:+
Coord C1 exon
chr9:36631586-36631666
Coord A exon
chr9:36634381-36634551
Coord C2 exon
chr9:36644412-36644591
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTGTGTGTTTGTAGATG
3' ss Score
9.36
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
CGTTTCCAACCTGCGAAGCTCTCAGCCAGTTCAGCTGTGCTAATGGCAGGTGCATTAGCATGAAGTGGCATTGTGACTCAG
Seq A exon
ATGATGACTGTGGAGATAACAGTGATGAGGCAGGCTGTGTTCACTTCTGTGCTAATGGCCAGTATAAGTGCACCAGCGGCAGGTGTATCCCGGACCACTGGGCCTGTGACGGAGACAACGACTGTGGAGACTTCAGTGATGAAAATGTGACGTGTGCTGGAGTTGCTCCTG
Seq C2 exon
CATTGCCTCCTGTGGAATGCAGTGCAGAAGAGTTTCACTGTCGTGCTGACGGGACCTGCATCCCTGAGCGCTGGCGCTGTGATGGGGATAAAGACTGCGAAGATGGCAGTGATGAAACCAACTGCAAGGGTGTCAAGAGAATGTGTGATCCACAAGCAAAGTTCACCTGCAAAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(63.2=88.9)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=66.7)
C2:
PF0005713=Ldl_recept_a=WD(100=63.3),PF0005713=Ldl_recept_a=PU(33.3=21.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCTCTCAGCCAGTTCAG
R:
GGTTTTGCAGGTGAACTTTGCT
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]