HsaEX0036409 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141680534-141709509:-
Coord C1 exon
chr2:141709429-141709509
Coord A exon
chr2:141707804-141707971
Coord C2 exon
chr2:141680534-141680716
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGTTGATGTTTCTTTCCAGATG
3' ss Score
10.64
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AATTCCCAACTTGTGAGCCACTAACCCAATTCGTATGCAAAAGTGGAAGATGCATTAGCAGCAAATGGCACTGCGACTCTG
Seq A exon
ATGACGACTGTGGGGACGGGAGTGATGAGGTGGGCTGTGTTCACTCTTGCTTTGATAATCAGTTCAGATGTTCCAGTGGCAGATGCATCCCAGGCCACTGGGCCTGTGATGGTGACAATGACTGTGGGGACTTCAGTGATGAAGCCCAGATCAATTGTACTAAAGAAG
Seq C2 exon
AGATTCATTCTCCTGCTGGTTGTAACGGAAATGAATTTCAGTGCCACCCTGATGGTAATTGCGTTCCTGATTTGTGGCGCTGTGATGGAGAAAAAGACTGTGAAGATGGTAGTGATGAAAAAGGTTGCAATGGTACCATACGATTGTGTGACCACAAAACCAAGTTTTCCTGTTGGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCCACTAACCCAATTCGT
R:
ACTCCAACAGGAAAACTTGGT
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)