RnoEX6016696 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25991780-26025779:-
Coord C1 exon
chr3:26025699-26025779
Coord A exon
chr3:26024509-26024676
Coord C2 exon
chr3:25991780-25991962
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTTCAGTATGTCTTTCCAGATG
3' ss Score
8.1
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
AATTTCCAACCTGTGAACCACTGACTCAGTTCCTATGCAAGAGTGGGAGATGTATCAGCAACAAATGGCACTGTGACACTG
Seq A exon
ATGATGACTGTGGGGACCGGAGTGATGAGGTGGGCTGTGTTCACTCTTGCCTTGATGACCAGTTCAGATGTGCGAGCGGCCGGTGTATACCAGGGCACTGGGCCTGTGATGGTGACAATGACTGCGGAGACTTCAGCGATGAGACACACGTCAACTGTACCAGAGAGG
Seq C2 exon
AAGCTCGTTCTCCTGTTGGATGCATTGGGAATGAATTTCAGTGCCACCCTGATGGAAACTGCATTCCTGATCTATGGCGCTGTGATGGAGAGAAAGATTGTGAGGATGGCAGTGATGAAAAGGGCTGCAATGGTACCATTCGACTGTGTGACCACAAAACCAAGTTCTCCTGCAAAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'14-18,'14-16,16-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCTGTGAACCACTGAC
R:
GCAGGAGAACTTGGTTTTGTGG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]