MmuEX6101027 @ mm9
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41231354-41264502:-
Coord C1 exon
chr2:41264422-41264502
Coord A exon
chr2:41263755-41263922
Coord C2 exon
chr2:41231354-41231536
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTTCAGTATTTCTTTCCAGATG
3' ss Score
8.62
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AATTTCCAACCTGTGAGCCTCTGACTCAGTTCATATGCAAGAGTGGGAGATGCATCAGCAACAAATGGCACTGCGACACTG
Seq A exon
ATGATGACTGTGGAGACAGGAGTGATGAGGTGGGCTGTGTTCACTCCTGCCTTGATGACCAGTTCAGATGTTCAAGTGGCCGGTGTATCCCAGGGCACTGGGCCTGTGATGGTGACAATGACTGCGGAGACTTCAGTGATGAAACACATATCAATTGTACAAAAGAGG
Seq C2 exon
AAGCTCGTTCTCCTGCTGGTTGCATCGGGAATGAATTTCAGTGCCGTCCTGATGGAAACTGCATCCCTGATCTGTGGCGCTGTGATGGAGAGAAAGACTGTGAGGATGGCAGTGATGAGAAGGGCTGCAATGGTACCATTCGACTGTGTGACCACAAAACCAAGTTTTCCTGCAGGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAACCTGTGAGCCTCTGA
R:
ACTCCTGCAGGAAAACTTGGT
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: