GgaEX1033880 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31526130-31529646:-
Coord C1 exon
chr7:31529566-31529646
Coord A exon
chr7:31527791-31527958
Coord C2 exon
chr7:31526130-31526312
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATCAATGTTTGCAGATG
3' ss Score
6.3
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
AATTCCCAACGTGTGAGCCACTAACTCAATTTATTTGCAAAAACGGAAGGTGCATTAGCAGCAAATGGCTCTGTGATTCAG
Seq A exon
ATGATGACTGTGGTGATGGAAGTGATGAACTAGGCTGCATCCACTCATGTTCTGCTGATCAGTTCAGGTGTTATAATGGCAGATGTATCCCAAGCCATTGGGCATGTGATGGTGACAATGACTGTGGAGATTACAGTGACGAAACCAGAACAAATTGCACCAAGGAAG
Seq C2 exon
AAACTCCTGCTCCTGGACGATGCAATGGGAAGGAATTTCAGTGCAGTCCTGATGGGAACTGTGTTCCTGAGCTGTGGCGCTGTGATGGAGAAAAGGACTGTGAAGATGGCAGTGATGAAAAAGGCTGTAATGGAACTTTACGTCTGTGTGATGAAAAGACAAAGTTCTCCTGTGTGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'30-50,'30-49,31-50
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGTGTGAGCCACTAACT
R:
ACTCACACAGGAGAACTTTGTCT
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]