HsaEX0036409 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140922965-140951940:-
Coord C1 exon
chr2:140951860-140951940
Coord A exon
chr2:140950235-140950402
Coord C2 exon
chr2:140922965-140923147
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGTTGATGTTTCTTTCCAGATG
3' ss Score
10.64
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AATTCCCAACTTGTGAGCCACTAACCCAATTCGTATGCAAAAGTGGAAGATGCATTAGCAGCAAATGGCACTGCGACTCTG
Seq A exon
ATGACGACTGTGGGGACGGGAGTGATGAGGTGGGCTGTGTTCACTCTTGCTTTGATAATCAGTTCAGATGTTCCAGTGGCAGATGCATCCCAGGCCACTGGGCCTGTGATGGTGACAATGACTGTGGGGACTTCAGTGATGAAGCCCAGATCAATTGTACTAAAGAAG
Seq C2 exon
AGATTCATTCTCCTGCTGGTTGTAACGGAAATGAATTTCAGTGCCACCCTGATGGTAATTGCGTTCCTGATTTGTGGCGCTGTGATGGAGAAAAAGACTGTGAAGATGGTAGTGATGAAAAAGGTTGCAATGGTACCATACGATTGTGTGACCACAAAACCAAGTTTTCCTGTTGGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'34-57,'34-56,35-57
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCCACTAACCCAATTCGT
R:
ACTCCAACAGGAAAACTTGGT
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development