DreEX6098162 @ danRer10
Exon Skipping
Gene
ENSDARG00000004789 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14603057-14605131:-
Coord C1 exon
chr22:14605051-14605131
Coord A exon
chr22:14603657-14603821
Coord C2 exon
chr22:14603057-14603239
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTATCTCTCTGTAGAGG
3' ss Score
9.95
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
ATTTCCCCACTTGTGAGCCGCTGACACAGTTTGGCTGTACTAATGGGAAATGCATCAGTGTGAAATGGCACTGCGATTCCG
Seq A exon
AGGATGACTGTGGGGATGGCAGTGATGAGGTGGGTTGTGTCCATGCCTGTTCAGTGGCTCAGTTTCAGTGCTCAAGCGGGAAGTGCATCCCTGAGCACTGGATGTGTGATGGAGACAATGACTGCGGTGACCTCAGCGATGAGAACGCTACCTGTTCCAGGACAG
Seq C2 exon
CGATTTCTGCAATTAATGACTGCAGCGAGAAGGAGTTTCACTGTCGTGGTGATGGCACATGCATTCCCGAAATTTGGCGCTGCGATGGAGACAAAGACTGTGAAGACGGTAGTGATGAATTTGCCTGTGAGGGAGCCAAGAGAATGTGCGACCCCAAGGCGAAGTTTACCTGCAAGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004789-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(63.2=88.9)
A:
PF0005713=Ldl_recept_a=PD(31.6=21.8),PF0005713=Ldl_recept_a=WD(100=69.1)
C2:
PF0005713=Ldl_recept_a=WD(100=62.3),PF0005713=Ldl_recept_a=PU(33.3=21.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCGCTGACACAGTTTG
R:
CCTTGCAGGTAAACTTCGCCT
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]