DreEX6038719 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52414310-52416013:+
Coord C1 exon
chr9:52414310-52414445
Coord A exon
chr9:52414702-52414848
Coord C2 exon
chr9:52415787-52416013
Length
147 bp
Sequences
Splice sites
3' ss Seq
GGCCTGTGTTTGTCTCTCAGTTC
3' ss Score
8.61
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGCTGAAGAAGAAGTGTCTCCAGGATTGCGGCAGTGGCGTAAAGCTCTCAGCGAGGTACGCAGCTCCAGTCAGCTCTCTCTGTGTTTGCAGCAGCTGCACAAGTCCATCGCCTGGGAGAAATCCATCATGAAAGTG
Seq A exon
TTCTGTCAGATGTGCTGTAAAGGAGACAATGAGGAGCTGCTGCTGCTGTGTGATGAATGTGACAAAGGCTGCCACACGTACTGCCATAAACCCAAGATCAGCACCATACCAGATGGAGACTGGTTCTGCCCGGCCTGCATTTCACAG
Seq C2 exon
GCGAGCTGTGAATCCCTGAAGACCAAGAAACCCTTGAACCGTTCAGGACTGAAGAAACGACAGAGAAAAGCATCTGCAGCCGGAGACTCAGAGGACGATTCAGCCAACAGCACTTCCAGAAGACAAGCGAAAGAGATCAAAAAGAGGAAAACAGAGGAAAGTCCTTTCACAGCCCCAGTGAAGCAGGAGAAACACAGAGACGACAGTAAAGACCTGGCCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979-'46-49,'46-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.671
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTCTCCAGGATTGCGG
R:
CTGGAAGTGCTGTTGGCTGAA
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]