DreEX6040360 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18896530-18952790:-
Coord C1 exon
chr16:18952723-18952790
Coord A exon
chr16:18945929-18946034
Coord C2 exon
chr16:18896530-18896624
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTTTTTCTTCTGCAGGAT
3' ss Score
12.03
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AAAAGCTGTACAACTCGACGGGTCGTGAGCTACGAAGAGCACTGTTCTCTCTCAAGCAAATCTTCCAG
Seq A exon
GATGATAAGGATCTGGTTCATGAGTTTGTGATGGCGGAGGGACTCACATGTCTTATTAAAGTGGGAGCTGAAGCTGATCAAAACTACCAAAACTACATTCTCAGAG
Seq C2 exon
CACTTGGACAGATCATGCTGTATGTAGATGGAATGAATGGGCTTATCGGACACAATGAAACCGTACAGTGGCTGTACACACTGGTTGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'5-9,'5-6,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(15.3=100)
A:
PF063718=Drf_GBD=FE(24.3=100)
C2:
PF063718=Drf_GBD=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTACAACTCGACGGG
R:
CTTTGATCCAACCAGTGTGTACA
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]