RnoEX0036004 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17085323-17160121:+
Coord C1 exon
chr18:17085323-17085390
Coord A exon
chr18:17091310-17091415
Coord C2 exon
chr18:17160027-17160121
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTCCTTCCTACTAGGAT
3' ss Score
11.36
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AAAAGCTGTACAACTCCACCGGCCGAGATCTAAGAAGGGCCCTTTTCTCGCTGAAGCAGATATTTCAG
Seq A exon
GATGACAAGGATTTGGTGCATGAATTCGTCATAGCTGAAGGTCTGACATGTTTGATCAAAGTGGGAGCCGAGGCGGATCAGAACTATCAGAACTACATCCTGAGGG
Seq C2 exon
CACTGGGTCAGATTATGCTGTATGTGGATGGGATGAATGGCGTCATCAACCACAGCGAGACCATCCAGTGGCTTTACACTCTTGTTGGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'21-18,'21-10,22-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(15.7=100)
A:
PF063718=Drf_GBD=FE(25.0=100)
C2:
PF063718=Drf_GBD=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTACAACTCCACCGG
R:
CTTTGAGCCAACAAGAGTGTAAAGC
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]