GgaEX6020763 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85529321-85580328:+
Coord C1 exon
chr2:85529321-85529388
Coord A exon
chr2:85543423-85543528
Coord C2 exon
chr2:85580234-85580328
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTTCTGTGGTAGGAT
3' ss Score
9.36
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAAACTTTACAATTCCAATGGACGGGAGCTGAGACGTGCACTTTTTTCATTGAAGCAAATATTTCAG
Seq A exon
GATGACAAGGACTTGGTTCATGAGTTCGTTATCGCTGAAGGCCTGACTTGCCTAATCAAAGTAGGAGCAGAGGCAGACCAGAATTATCAGAACTACATCCTGAGAG
Seq C2 exon
CCTTGGGCCAGATTATGCTCTACGTTGATGGCATGAATGGAGTAATAAACCATAATGAAACCATCCAATGGCTGTACACACTTATTGGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'4-10,'4-7,5-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTTACAATTCCAATGGACGGG
R:
CTTTGACCCAATAAGTGTGTACAGC
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]