BtaEX0014639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20862642-20941246:-
Coord C1 exon
chr24:20941179-20941246
Coord A exon
chr24:20933963-20934068
Coord C2 exon
chr24:20862642-20862736
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTGTTTCCTGCCAGGAT
3' ss Score
10.95
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAAAACTGTACAACTCCACTGGACGAGATTTAAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG
Seq A exon
GATGACAAGGATTTGGTGCATGAATTTGTAGTGGCTGAAGGTCTGACGTGTTTGATCAAGGTGGGAGCTGAGGCAGATCAGAACTATCAGAACTACATTCTGAGGG
Seq C2 exon
CTTTGGGCCAGATTATGTTGTACGTGGATGGGATGAATGGAGTAATAAACCACAATGAAACCATTCAGTGGCTGTATACTCTCATTGGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'8-12,'8-10,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(18.5=100)
A:
PF063718=Drf_GBD=FE(29.4=100)
C2:
PF063718=Drf_GBD=FE(26.1=100)
Main Skipping Isoform:
ENSBTAT00000061003fB2786
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGTACAACTCCACTGGACG
R:
CTTTGACCCAATGAGAGTATACAGCC
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development