MmuEX6000636 @ mm9
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25056138-25127755:+
Coord C1 exon
chr18:25056138-25056205
Coord A exon
chr18:25062394-25062499
Coord C2 exon
chr18:25127661-25127755
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTTCCTACCCAGGAT
3' ss Score
9.99
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AAAAGCTGTACAACTCCAGTGGCCGAGATCTAAGAAGGGCCCTTTTCTCACTGAAGCAGATATTTCAG
Seq A exon
GATGACAAGGATTTGGTGCATGAATTTGTCATAGCTGAAGGTCTGACCTGTTTGATCAAAGTGGGAGCCGAGGCGGATCAGAACTATCAGAACTACATCCTGAGGG
Seq C2 exon
CTCTGGGTCAGATTATGTTGTATGTGGATGGGATGAATGGCGTCATCAACCACAGCGAGACCATCCAGTGGCTTTACACGCTCGTTGGGTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(16.5=100)
A:
PF063718=Drf_GBD=FE(26.3=100)
C2:
PF063718=Drf_GBD=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTACAACTCCAGTGGC
R:
CTTCGACCCAACGAGCGTGTA
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: