HsaEX6038710 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34081895-34156508:+
Coord C1 exon
chr18:34081895-34081962
Coord A exon
chr18:34092401-34092506
Coord C2 exon
chr18:34156414-34156508
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTTTCCTGCCAGGAT
3' ss Score
10.57
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAAAACTATACAACTCCAGCGGACGAGATTTGAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG
Seq A exon
GATGACAAGGATTTGGTGCATGAATTTGTAGTGGCTGAAGGTCTGACATGTTTGATCAAGGTGGGAGCTGAGGCTGATCAGAACTATCAGAACTACATCTTAAGGG
Seq C2 exon
CTTTGGGCCAGATTATGTTGTATGTGGATGGAATGAATGGAGTAATAAACCGCAATGAAACCATTCAGTGGCTGTACACTCTCATTGGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(17.1=100)
A:
PF063718=Drf_GBD=FE(27.1=100)
C2:
PF063718=Drf_GBD=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTATACAACTCCAGCGGACG
R:
TTTGACCCAATGAGAGTGTACAGC
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)