GgaEX6020763 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83268193-83319200:+
Coord C1 exon
chr2:83268193-83268260
Coord A exon
chr2:83282295-83282400
Coord C2 exon
chr2:83319106-83319200
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTTCTGTGGTAGGAT
3' ss Score
9.36
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAAACTTTACAATTCCAATGGACGGGAGCTGAGACGTGCACTTTTTTCATTGAAGCAAATATTTCAG
Seq A exon
GATGACAAGGACTTGGTTCATGAGTTCGTTATCGCTGAAGGCCTGACTTGCCTAATCAAAGTAGGAGCAGAGGCAGACCAGAATTATCAGAACTACATCCTGAGAG
Seq C2 exon
CCTTGGGCCAGATTATGCTCTACGTTGATGGCATGAATGGAGTAATAAACCATAATGAAACCATCCAATGGCTGTACACACTTATTGGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'6-21,'6-15,9-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(15.9=100)
A:
PF063718=Drf_GBD=FE(25.4=100)
C2:
PF063718=Drf_GBD=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTTACAATTCCAATGGACGGG
R:
CTTTGACCCAATAAGTGTGTACAGC
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]