DreEX6041422 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30279070-30279714:+
Coord C1 exon
chr16:30279070-30279160
Coord A exon
chr16:30279428-30279550
Coord C2 exon
chr16:30279626-30279714
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTCACCTCACTTCCCAGGCG
3' ss Score
9.54
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATGTCATCTCTAGAGCAGGACGGAGAAGAGGTGATCGGTCAAGCCCGCTGCCCTTTCGAGTCCCGCCAGTCCAACGTTGGCCTGTTTGCCG
Seq A exon
GCGGTGACTTCTACTCAGCCACGATGACTGATTTTCTAGCGAGCGATGCAGTGATTTACCGAAGTTTAGGAGAAAGCAGTCCTGTCCTGCGTACTGTAAAATATGACTCCAAGTGGCTGCGAG
Seq C2 exon
AACCGCATTTTCTTCATGCCATCGAGTATGGGAACTACGTGTACTTCTTCCTCAGTGAGATTGCAGTGGAGTATACCACCCTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
PF0140314=Sema=FE(9.7=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCTCTAGAGCAGGACGG
R:
ACTCCACTGCAATCTCACTGAG
Band lengths:
162-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]