DreEX6058987 @ danRer10
Exon Skipping
Gene
ENSDARG00000056018 | itga6l
Description
integrin, alpha 6, like [Source:ZFIN;Acc:ZDB-GENE-040914-57]
Coordinates
chr14:41186588-41189466:-
Coord C1 exon
chr14:41189110-41189466
Coord A exon
chr14:41186810-41186937
Coord C2 exon
chr14:41186588-41186679
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATGATGGTTATGTTTTCAGACT
3' ss Score
6.12
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AAGGGCATGTGTTCACCTTTCCTTCACAGCTAAACATTAACCTACATACTGTACAATTGTTCTTATCCCCACCCTGAGGACATAAATCAGCCAGGGTTGATATAAAGTGTCGCCTCGCCTCACCCTGCTGTAGGAGTTGTTGGGGTTGTTTTCTGGAATTAAACTGCAGTCTCCTCCACCGAGCTTCATGGTCATGTTGTTCAGTCTCCTCTTCACCGTGTGGATAATTCTTCCAGCACAGGTTTTTGTCTTTAACCTGGACACACAGAACGTGATGAGGAAGCGTGGAGAAGCAGACAGTTTGTTTGGCTTTTCTATGGCCATGCATCATCAGCTCAAACCTTCAGACCAACGCGT
Seq A exon
ACTGCTGATTGGAGCTCCTCGTGCTAAAGCATTGCCAGTTCAAAACGCCAATATATCTGGTGGTCTGTACAGGTGTAAATTCACAACTCAACCTGATGACTGTGAACGCATCCCCGTTGATATAAAAG
Seq C2 exon
CTCGATCTAAAGATCATCCAGGAGTGGACTATAGAGAAAACCAATGGCTAGGTGTTAGTGTTCAAAGTCAGGGACGAGGAGGCAAAGTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056018-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTCTTCACCGTGTGGA
R:
CTACTTTGCCTCCTCGTCCCT
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]