DreEX6068308 @ danRer10
Exon Skipping
Gene
ENSDARG00000061990 | kcnh4b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4b [Source:ZFIN;Acc:ZDB-GENE-121214-54]
Coordinates
chr12:13378637-13386806:+
Coord C1 exon
chr12:13378637-13378768
Coord A exon
chr12:13380010-13380137
Coord C2 exon
chr12:13386566-13386806
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTTTTTTTGACAGATA
3' ss Score
10.86
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAAGTTTGTTCTGGTGTCTGTTGGACATTGTACCCATTAAGAATGAGAAGGGGGAGATGGTGCTTTTTCTCTTTTCTTTCAAAGACATCACAGAAACGCACGAGAAGAGCCATCACAGCAGCAAAACCGATG
Seq A exon
ATAAGGCAAACAGCAGGACTACTGAAAAGTCTCATATCAGTAAAGCTAGAAGGAGGGGTCATGCCATGATTTACCAGCTAACCAGCCAGTTTACACGTGACAGCAAAAATGACGTCAAATTAAGTCGG
Seq C2 exon
GACATGTTTGAAAAACCGTCTCTGCCTGAGTATAAAGTGGCAGCAGTTCAGAAGTCTCGATTCATCCTGCTGCACTACAGTGTGTCCAAGGCATTGTGGGACTGGATGATTCTATTGGCCACTTTCTATGTTGCTGTGACAGTGCCATACAACGTGTGTTTCACAGCGTACAGTGATGTGGAGACTGCAGGCAGGAGCACGATAGTTAGCGACATTGCCGTGGAGATGCTTTTTATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061990-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.302 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.5=68.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGAGCCATCACAGCAG
R:
GCTAACTATCGTGCTCCTGCC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]