DreEX6071736 @ danRer10
Exon Skipping
Gene
ENSDARG00000059054 | pdk2b
Description
pyruvate dehydrogenase kinase, isozyme 2b [Source:ZFIN;Acc:ZDB-GENE-040426-939]
Coordinates
chr19:5759902-5762442:+
Coord C1 exon
chr19:5759902-5759973
Coord A exon
chr19:5760075-5760259
Coord C2 exon
chr19:5762353-5762442
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTTAATCGTTTTCCCCCAGATT
3' ss Score
9.29
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTTTGTCCAAAGTCTGATGGACATCCTGGAATTCCAAGACAAGTGTCCTGATGATCCCAGAGTTCTCGCAGA
Seq A exon
ATTTGTGGAAACTCTGGTGACCATTAGGAACAGGCACAATGACGTGGTGCCAACCATGGCTCAGGGCGTCATCGAGTATAGAGACACGTTCGGGGCAGATCCTGTGACAAGTCAGAACATTCAGTACTTTCTGGACCGCTTTTACATGAGCCGTGTTTCCATTCGCATGCTCATCAACCAGCACA
Seq C2 exon
CTCTGATCTTTGATGGCTCCACAAATCCAGGACATCCCAGCAGCATCGGGTGCATTGACTCCTGCTGCGACGTCACAGACGTAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059054-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTCTGATGGACATCCTGG
R:
CGTCGCAGCAGGAGTCAATG
Band lengths:
138-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]