DreEX6073051 @ danRer10
Exon Skipping
Gene
ENSDARG00000062352 | sema4ab
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
Coordinates
chr19:24797018-24798712:+
Coord C1 exon
chr19:24797018-24797162
Coord A exon
chr19:24797814-24798003
Coord C2 exon
chr19:24798597-24798712
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTTATCTCTGCAGTGT
3' ss Score
9.73
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCGAGTAAACTTGGGTCGCTCAGCCGTGTGTGCTTTCAGCCTCAAAGACATTAAAAAGGTGTTTACAGGACGTTATAAGGTTCTGAATCGGGATACTCTGAAATGGAGCACAAGGGTGCAGGAGCAGATGGCAAACCCTGGAGAG
Seq A exon
TGTGGACTGCACAATGCTTCAGACAACACTCTGCGCTTTGTTAAGGACAATTTCCTGGCTGATAAAAGTGTTCTACCAGTCAATCAGGGCCTGACAGTGGTGTCACCTGATAAGAGCTACAGCAACATCGCAGCTCAGAGAGTACAAGGAGCACGCGGCAAATATTACACTGTGCTTTATCTGCTTACAG
Seq C2 exon
AGTCAGGCTTCCTGCACAAAACTGTGCTCTTGAAGAAGGGAGCTCACATCATCGAGGAGATACAAGTGTTTCATCAACCTCAGATGGTCAAAAGCCTCCTTCTGTCTGTTTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062352-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.5=100)
A:
PF0140314=Sema=FE(15.0=100)
C2:
PF0140314=Sema=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTAAACTTGGGTCGCTC
R:
GGAGGCTTTTGACCATCTGAGG
Band lengths:
244-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]