DreEX6078212 @ danRer10
Exon Skipping
Gene
ENSDARG00000032079 | acsl3a
Description
acyl-CoA synthetase long-chain family member 3a [Source:ZFIN;Acc:ZDB-GENE-050420-181]
Coordinates
chr15:43108441-43110946:+
Coord C1 exon
chr15:43108441-43108580
Coord A exon
chr15:43108715-43108887
Coord C2 exon
chr15:43110872-43110946
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTCAGTTTTCCTGTATCCAGGCT
3' ss Score
5.88
5' ss Seq
ATCGTGAGA
5' ss Score
3.36
Exon sequences
Seq C1 exon
GAAATAATGGATCGCATCTACAAGAATGTGATGCTGAGGGTGGAGCAAATGAGTGGATTTCAGAGGACTCTCTTTCTGCTGGCCTACAACTACAAGATGGAGCAGCTGGCAATGGGATACAGCACTCCACTGTGTGATAA
Seq A exon
GCTGGTGTTCAGGAAGGTTCGGGCTCTGCTGGGTGGGCGTCTGCGTGTGTTGTTGTCAGGCGGAGCTCCTCTGTCTGCGGCGACCCAGCGCTTCATGAACATCTGCTTCTGCTGTCCTGTAGGTCAGGGCTACGGCCTCACCGAGACCTGCGGCGCAGGCACCATCAGCCATC
Seq C2 exon
TGTGGGATTACAGTACAGGGAGAGTTGGAGCACCGCTGGTCTGCTGTGAACTTCAGCTGAAGGACTGGATAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032079-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.7=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGATCGCATCTACAAGAATGTGA
R:
CCTCTATCCAGTCCTTCAGCTGA
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]