DreEX6080006 @ danRer10
Exon Skipping
Gene
ENSDARG00000002084 | lamb2
Description
laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
Coordinates
chr23:20281186-20283679:-
Coord C1 exon
chr23:20283544-20283679
Coord A exon
chr23:20281407-20281565
Coord C2 exon
chr23:20281186-20281313
Length
159 bp
Sequences
Splice sites
3' ss Seq
AATGATGTATATATTTTTAGGGC
3' ss Score
7.33
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATGCTCAATGGAAACAGGGCAGTGTCAGTGTCGAAGCCACATGATTGGTCGCCAGTGCAACCAGGTGGAGTCTGGGTACTTTTTCATGGCACTTGACCACTACATCTATGAAGCTGAAACTGCCAAACTGGGTCAA
Seq A exon
GGCTCTGTTTTTGAGGAGAGAGAGTACCAGCCGGGTCGCCCCATCTCATGGACAGGCACAGGCTTTGCACGAGCTCCTGAGGGCGGGACGCTGGAATTCGCAATTAACAACATCCCATACTCTATGGAATATGACGTCCTGATTCGCTATGAGCTTCAG
Seq C2 exon
ATGCCACGTGACTGGGAAGAGGTGCGTGTTGTAGTGATTAGACCTGGTCCTATACCTACCAGCAGTCCATGTGGAAACACCATCCCTGCAGATGATCTGCTAACGGTGTCGCTTTCCTCTGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002084-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.023
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(73.3=71.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGGGCAGTGTCAGTGT
R:
GAAAGCGACACCGTTAGCAGA
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]