RnoEX0049267 @ rn6
Exon Skipping
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117272005-117272694:+
Coord C1 exon
chr8:117272005-117272137
Coord A exon
chr8:117272332-117272490
Coord C2 exon
chr8:117272567-117272694
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGACTGCCTTGACTCTCAGGTG
3' ss Score
7.82
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GTGTGATGAAGCCACGGGTCAGTGCCGCTGCCGCCCACACATGATTGGGCGGCGCTGTGAACAAGTACAGCCTGGCTACTTCCGGCCTTTTCTAGACCATCTAACCTGGGAGGCTGAGGGTGCCCATGGGCAG
Seq A exon
GTGCTTGAGGTGGTAGAACGTCTGGTGACCAACCGAGAGACTCCGTCCTGGACTGGTGTAGGCTTTGTGCGACTGCGGGAAGGTCAGGAAGTGGAGTTCCTGGTGACCTCTTTGCCTAGGGCCATGGACTATGACCTGCTACTGCGCTGGGAGCCCCAG
Seq C2 exon
GTTCCTGAGCAGTGGGCAGAGCTGGAATTGGTGGTGCAGCGCCCAGGGCCTGTGTCTGCACACAGTCCGTGTGGGCACGTGCTGCCGAGGGATGACCGCATTCAGGGGATGCTTCACCCAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768-'19-15,'19-14,21-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.116
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(73.3=73.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGCCACGGGTCAGTG
R:
GGGTGAAGCATCCCCTGAATG
Band lengths:
248-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]