HsaEX7001991 @ hg38
Exon Skipping
Gene
ENSG00000172037 | LAMB2
Description
laminin subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:6487]
Coordinates
chr3:49128458-49129152:-
Coord C1 exon
chr3:49129020-49129152
Coord A exon
chr3:49128661-49128819
Coord C2 exon
chr3:49128458-49128585
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGGCTGCATTATCTCCCAGGTG
3' ss Score
8.72
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GTGTGATGAGGGCACAGGTCAATGCCACTGCCGCCAGCACATGGTTGGGCGACGCTGTGAGCAGGTGCAACCTGGCTACTTCCGGCCCTTCCTGGACCACCTAATTTGGGAGGCTGAGGACACCCGAGGGCAG
Seq A exon
GTGCTCGATGTGGTGGAGCGCCTGGTGACCCCCGGGGAAACTCCATCCTGGACTGGCTCAGGCTTCGTGCGGCTACAGGAAGGTCAGACCCTGGAGTTCCTGGTGGCCTCTGTGCCGAAGGCTATGGACTATGACCTGCTGCTGCGCTTAGAGCCCCAG
Seq C2 exon
GTCCCTGAGCAATGGGCAGAGTTGGAACTGATTGTGCAGCGTCCAGGGCCTGTGCCTGCCCACAGCCTGTGTGGGCATTTGGTGCCCAAGGATGATCGCATCCAAGGGACTCTGCAACCACATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172037-'25-24,'25-22,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.023
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(72.7=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGGCACAGGTCAATGC
R:
AGAGTCCCTTGGATGCGATCA
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains