MmuEX6068897 @ mm9
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108386019-108386704:+
Coord C1 exon
chr9:108386019-108386151
Coord A exon
chr9:108386342-108386500
Coord C2 exon
chr9:108386577-108386704
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTTGACTGCATTGACTCAGGGG
3' ss Score
4.07
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GTGTGATGAGGCCACCGGTCAGTGCCGCTGCCGCCAACACATGATTGGGCGGCGCTGCGAACAAGTGCAGCCTGGCTACTTCCGGCCTTTTCTGGACCATTTAACCTGGGAGGCTGAGGCTGCCCAAGGGCAG
Seq A exon
GGGCTTGAGGTGGTAGAGCGGCTGGTGACCAACCGAGAGACTCCGTCCTGGACTGGCCCAGGCTTTGTGCGGCTGCGAGAAGGTCAGGAAGTGGAGTTCCTGGTGACCTCTTTGCCTAGGGCCATGGACTATGACCTGCTACTGCGCTGGGAGCCCCAG
Seq C2 exon
GTCCCTGAGCAATGGGCAGAGCTGGAACTGATGGTGCAGCGTCCGGGGCCTGTGTCTGCTCACAGTCCGTGCGGGCATGTGCTGCCTAAGGATGACCGCATTCAGGGGATGCTTCACCCAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'19-14,'19-13,21-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.186
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(73.3=73.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGGCCACCGGTCAG
R:
GGGTGAAGCATCCCCTGAATG
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: