MmuEX6068897 @ mm10
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108483688-108484373:+
Coord C1 exon
chr9:108483688-108483820
Coord A exon
chr9:108484011-108484092
Coord C2 exon
chr9:108484246-108484373
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTTGACTGCATTGACTCAGGGG
3' ss Score
4.07
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTGTGATGAGGCCACCGGTCAGTGCCGCTGCCGCCAACACATGATTGGGCGGCGCTGCGAACAAGTGCAGCCTGGCTACTTCCGGCCTTTTCTGGACCATTTAACCTGGGAGGCTGAGGCTGCCCAAGGGCAG
Seq A exon
GGGCTTGAGGTGGTAGAGCGGCTGGTGACCAACCGAGAGACTCCGTCCTGGACTGGCCCAGGCTTTGTGCGGCTGCGAGAAG
Seq C2 exon
GTCCCTGAGCAATGGGCAGAGCTGGAACTGATGGTGCAGCGTCCGGGGCCTGTGTCTGCTCACAGTCCGTGCGGGCATGTGCTGCCTAAGGATGACCGCATTCAGGGGATGCTTCACCCAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'30-24,'30-23,31-24
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.186
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(73.3=73.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCTTTTCTGGACCATTT
R:
GGGTGAAGCATCCCCTGAATG
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types