BtaEX6095452 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022635 | LAMC1
Description
Bos taurus laminin, beta 2 (laminin S) (LAMB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046247]
Coordinates
chr22:51460382-51461061:+
Coord C1 exon
chr22:51460382-51460514
Coord A exon
chr22:51460696-51460854
Coord C2 exon
chr22:51460934-51461061
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCGGCTGCATTGCCTCCCAGGTG
3' ss Score
7.71
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTGCAACGAGGCCACGGGTCAGTGCCGCTGCCGCCAGCACATGGTGGGGCGACGCTGCGAGCAGGTGCAGCCTGGTTATTTCCGGCCCTTCCTTGACCACCTAACTTGGGAGGCTGAGGAACCCCGGGGGCAG
Seq A exon
GTGCTCGATGTGGTGGAGCGTCTGGTGACCCCTGGGGGCACTCCATCTTGGACCGGCCCGGGCTTTGTTAGGCTGCAGGAAGGCCAGGTGCTGGAGTTCGTGGTGGCCTCTGTACCGAGAGCCATGGACTACGACGTGCTCCTGCGCTTGGAGCCCCAG
Seq C2 exon
GTGCCAGAGCAGTGGGCAGAGATGGAACTGACCGTGCAGCGTCCAGGGCCTGTGTCTGCCCGCAGCCCATGTGGGCACGTGCTGCCCCAAGACGACCACATCCCAGGGACCCTACGGCCAGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022635-'22-18,'22-16,23-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.605
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(73.3=73.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGGCCACGGGTCAG
R:
GTAGGGTCCCTGGGATGTGG
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]