GgaEX6010556 @ galGal4
Exon Skipping
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11548768-11549446:+
Coord C1 exon
chr12:11548768-11548903
Coord A exon
chr12:11549074-11549229
Coord C2 exon
chr12:11549319-11549446
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCCCCTTTCCCCAGGGC
3' ss Score
12.61
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTGCCATGGAGACGGGGCAGTGCCGGTGCCGCAGCCACATAGTGGGACGGCAGTGCGAGCAGGTGGAGCCCGGCTTCTACCGCATCAACCTGGACCACTACACCTACGAGGCCGAGGATGCCCGGCTGCACATG
Seq A exon
GGCTCGGTGGTGCAGCGCGAGCCTCACGCAGGTCACCTGGCCTCCTGGACAGGGTCAGGCTTTGCCCGCATGCAGGAGGGCGGCTGGGTAGAGTTCCACGTGAGCGACGTGCCCTTCTCCATGGAATACGATGTCATCATCCGCTACGAGCCCCAG
Seq C2 exon
CACCCGGAGCCCTGGAAAGAGGTGAGGATGCAGGTGCTGCGCCCCAGCCCCGTGTCTGCCAGCAGCCCGTGCGGGAACACCATCCCAGCCGACGACCAGCTCTCCACCAGCCTCCTGTCTGGCGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802-'13-18,'13-14,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.186
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(75.0=78.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGACGGGGCAGT
R:
GACAGGAGGCTGGTGGAGAG
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]