GgaEX6010556 @ galGal3
Exon Skipping
Gene
ENSGALG00000006802 | LAMB2
Description
NA
Coordinates
chr12:11839663-11840341:+
Coord C1 exon
chr12:11839663-11839798
Coord A exon
chr12:11839969-11840124
Coord C2 exon
chr12:11840214-11840341
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCCCCTTTCCCCAGGGC
3' ss Score
12.61
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTGCCATGGAGACGGGGCAGTGCCGGTGCCGCAGCCACATAGTGGGACGGCAGTGCGAGCAGGTGGAGCCCGGCTTCTACCGCATCAACCTGGACCACTACACCTACGAGGCCGAGGATGCCCGGCTGCACATG
Seq A exon
GGCTCGGTGGTGCAGCGCGAGCCTCACGCAGGTCACCTGGCCTCCTGGACAGGGTCAGGCTTTGCCCGCATGCAGGAGGGCGGCTGGGTAGAGTTCCACGTGAGCGACGTGCCCTTCTCCATGGAATACGATGTCATCATCCGCTACGAGCCCCAG
Seq C2 exon
CACCCGGAGCCCTGGAAAGAGGTGAGGATGCAGGTGCTGCGCCCCAGCCCCGTGTCTGCCAGCAGCCCGTGCGGGAACACCATCCCAGCCGACGACCAGCTCTCCACCAGCCTCCTGTCTGGCGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802-'16-17,'16-15,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.186
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(75.0=78.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGACGGGGCAGT
R:
GACAGGAGGCTGGTGGAGAG
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]