DreEX6083047 @ danRer10
Exon Skipping
Gene
ENSDARG00000044808 | slc4a4b
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-091030-1]
Coordinates
chr21:5953467-5959816:+
Coord C1 exon
chr21:5953467-5953543
Coord A exon
chr21:5959486-5959643
Coord C2 exon
chr21:5959729-5959816
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCATTGTTTCTCTCTTTAGTTG
3' ss Score
9.36
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
Exon sequences
Seq C1 exon
GCAGTCCGACCACAGCTCATCGTAACCTGACCTCCACCAGCCTGAATGACTTGTCAGACAAACCAGAGAAAGACCAG
Seq A exon
TTGAATAATAAATTCATGAAGAAAATCCCCCGGGATGCCGAAGCGTCAAACGTGTTGGTGGGAGAGGTGGATTTTCTCGACGCTCCATTTGTTTCGTTTGTTCGCCTTCAGCAGTCGGTTATGTTAGGAGGTCTGACCGAAGTTCCGGTTCCCACACG
Seq C2 exon
CTTCCTTTTTATTCTGCTGGGGCCCAAAGGAAAGGCCAAATCATACCGTGAGATTGGACGTGCCATCGCCACGCTCATGTCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044808-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(9.9=100)
A:
PF075658=Band_3_cyto=FE(20.6=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGACCACAGCTCATCGTA
R:
CTCGTCAGACATGAGCGTGG
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]