DreEX6090795 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10729814-10730708:-
Coord C1 exon
chr11:10730620-10730708
Coord A exon
chr11:10730006-10730163
Coord C2 exon
chr11:10729814-10729901
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTCTTTTGTCTGCAGATA
3' ss Score
9.08
5' ss Seq
CCGGTATAT
5' ss Score
5.35
Exon sequences
Seq C1 exon
GTCAAATGGTGTCTCCTCAGACTCAGCCCATCAATACAGAGGGTCGAGGTGAAGGCAGTCGTGAGAACAGTGCTGTTGACTTCAGCAAA
Seq A exon
ATAGACCTCCACTTCATGAAAAAAATCCCACCGGGGGCTGAGGCGTCTAACATCTTGGTGGGTGAGCTGGAGTTTCTGGAGAAACCTGTGGTGGCCTTCATCCGTCTGTCTCCTGCTGTGCTGCTCAATGGGCTGGCAGAGGTCCCGATCACCACCCG
Seq C2 exon
GTTTCTCTTCATTCTGCTGGGGCCAATGGGAAAAGGACCACAGTATCATGAGATTGGTCGTTCCATTGCCACACTCATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133-'15-12,'15-10,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.2=100)
A:
PF075658=Band_3_cyto=FE(20.1=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAATGGTGTCTCCTCAGA
R:
TGTCATGAGTGTGGCAATGGA
Band lengths:
171-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]