DreEX6094846 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21307053-21309319:-
Coord C1 exon
chr24:21309250-21309319
Coord A exon
chr24:21307330-21307457
Coord C2 exon
chr24:21307053-21307164
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTGTTTGTTTCAGGGT
3' ss Score
11.23
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGAGCCTCAGGCAATGTGTTACACTGAAACGTCCAACTTGGATGGAGAGACCAACTTAAAGATCAGACAG
Seq A exon
GGTCTCTCTCTGACAGCTAGTTTTCAGTCTTTGGAGGATCTGATAGCACTGTCAGGTCGTCTTGAATGTGAAGGTCCAAACAGACACTTGTACGACTTCACTGGAACACTGCGCTTAGACAACCACAA
Seq C2 exon
CCCGGCTCCTCTTGGGCCTGACCAGGTGCTGTTACGAGGTGCTCAGCTCAGGAACACGCAGTGGGTTGTGGGAATTGTAGTTTACACTGGACATGATTCAAAACTTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.4=100)
A:
PF0012215=E1-E2_ATPase=FE(15.3=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGCAATGTGTTACACTGA
R:
CTGCATAAGTTTTGAATCATGTCCA
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]