MmuEX6041879 @ mm9
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60652547-60655874:-
Coord C1 exon
chr14:60655805-60655874
Coord A exon
chr14:60654022-60654149
Coord C2 exon
chr14:60652547-60652658
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCTCACCGTTCCATTTCAGGGC
3' ss Score
9.68
5' ss Seq
GAGGTTTCA
5' ss Score
-4.4
Exon sequences
Seq C1 exon
TGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGCGAGACGAACCTTAAAATACGACAG
Seq A exon
GGCTTGAGCCACACAACCGACATGCAGACGAGGGACGTGCTCATGAAGCTGTCGGGAAGGATAGAGTGTGAAGGGCCCAACCGCCACCTCTACGACTTCACCGGCAACCTGCACTTGGATGGGAAGAG
Seq C2 exon
CTCCGTTGCCCTTGGACCTGACCAGATCCTTCTGAGAGGCACCCAGCTCAGGAACACACAGTGGGTCTTCGGCGTCGTTGTGTACACTGGACATGACAGCAAGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.4=100)
A:
PF0012215=E1-E2_ATPase=FE(15.4=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCCAGGGGATGTG
R:
TGCATGAGCTTGCTGTCATGT
Band lengths:
181-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: