BtaEX0000712 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr12:34010473-34013335:-
Coord C1 exon
chr12:34013266-34013335
Coord A exon
chr12:34011808-34011935
Coord C2 exon
chr12:34010473-34010584
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTGGGGTTGAACGTTTTAGGGT
3' ss Score
4.65
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
TGAACCTCAGGCAATGTGTTACGTTGAAACAGCCAATCTGGACGGGGAGACGAACCTTAAAATACGTCAG
Seq A exon
GGTTTGAGTCACACTGCGGACATGCAGACGAGGGAGGTGCTGATGAAGTTGTCTGGGACCATAGAGTGCGAAGGGCCCAATCGCCACCTCTACGACTTCACCGGGAACTTGAACTTGGATGGGAAAAG
Seq C2 exon
CCCCGTTGCCCTTGGGCCGGACCAGATCTTATTGAGAGGCACACAGCTTAGAAACACTCAGTGGGGCTTTGGCATAGTTGTCTACACTGGACATGACACCAAGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.4=100)
A:
PF0012215=E1-E2_ATPase=FE(15.3=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGGCAATGTGTTACGT
R:
TGCATGAGCTTGGTGTCATGT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development