GgaEX6006309 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176029488-176033378:+
Coord C1 exon
chr1:176029488-176029557
Coord A exon
chr1:176032102-176032229
Coord C2 exon
chr1:176033267-176033378
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTTTGATCTCTGCAGGGA
3' ss Score
9.01
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
TGAACCTCAAGCCATGTGCTATATTGAAACAGCTAATCTTGATGGGGAGACGAATCTTAAAATACGACAG
Seq A exon
GGACTGTCTCTAACTGCTAGTCTCCAGTCAAGAGAAGAATTGATGAAAGTATCTGGAAGGATAGAGTGTGAAGGACCAAACCGTCATCTCTATGACTTCACTGGAACCTTACGCTTAGATGGTCAAAG
Seq C2 exon
CCCAGTTCCAGTTGGTCCAGACCAGATCTTGCTAAGAGGTGCACAACTGAGAAACACTCAGTGGGTCTTGGGTATTGTTGTGTATACAGGATTTGATACAAAACTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.4=100)
A:
PF0012215=E1-E2_ATPase=FE(15.3=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTCAAGCCATGTGC
R:
TGCATGAGTTTTGTATCAAATCCTGT
Band lengths:
181-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]