HsaEX0007067 @ hg19
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:13533]
Coordinates
chr13:26114457-26117540:+
Coord C1 exon
chr13:26114457-26114526
Coord A exon
chr13:26116057-26116184
Coord C2 exon
chr13:26117429-26117540
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGTTTAATCTTTTAGGGT
3' ss Score
9.38
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TGAACCTCAGGCAATGTGTTATGTTGAAACAGCTAATCTGGATGGGGAGACGAACCTTAAAATACGTCAG
Seq A exon
GGTTTGAGTCACACTGCTGACATGCAAACACGTGAAGTTCTGATGAAGTTATCTGGAACTATAGAGTGTGAAGGGCCCAACCGCCACCTCTATGACTTCACTGGAAACTTGAACTTAGATGGGAAAAG
Seq C2 exon
CCTTGTTGCCCTTGGGCCTGACCAGATCTTATTAAGAGGTACACAGCTTAGAAATACTCAGTGGGTCTTTGGCATAGTTGTTTATACTGGACACGACACCAAACTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-'8-12,'8-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.4=100)
A:
PF0012215=E1-E2_ATPase=FE(15.3=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.5=100),PF138431=DDE_Tnp_1_7=PU(19.2=36.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGGCAATGTGTTATGTTGA
R:
TGCATGAGTTTGGTGTCGTGT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)