RnoEX0013432 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40343097-40345471:-
Coord C1 exon
chr15:40345402-40345471
Coord A exon
chr15:40344741-40344868
Coord C2 exon
chr15:40343097-40343208
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGCTCATGATTCCATTTCAGGGT
3' ss Score
7.02
5' ss Seq
GAGGTTTCG
5' ss Score
-2.64
Exon sequences
Seq C1 exon
TGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGTGAGACGAACCTTAAAATACGACAG
Seq A exon
GGTTTGAGCCACACAGCCGACATGCAGACAAGGGAAGTGCTCATGAAGCTGTCCGGAAGGATAGAGTGTGAAGGGCCCAACCGCCACCTCTACGATTTCACTGGCACCCTGCACTTGGATGGGAAGAG
Seq C2 exon
CTCTGTTGCCCTTGGGCCTGACCAGATCTTACTGAGAGGCACCCAGCTTAGGAACACACAGTGGGTCTTTGGCGTTGTTGTGTATACCGGACATGACACCAAACTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'21-14,'21-13,22-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.4=100)
A:
PF0012215=E1-E2_ATPase=FE(15.3=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCCAGGGGATGTG
R:
ATGAGTTTGGTGTCATGTCCGG
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]