DreEX6095461 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27113934-27117279:+
Coord C1 exon
chr24:27113934-27114057
Coord A exon
chr24:27115702-27115823
Coord C2 exon
chr24:27117168-27117279
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTATTAATTTACAGGTA
3' ss Score
9.45
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCAGTCTTGAGCTCACTGACATGTCTTCAGTTGCATAAGCGTGCAGAAAAGATTGCCACCATGTTGATGGAGCGAGGACACCTGCAGGACGGGGATCACGTTGCACTGGTTTACCCACCTG
Seq A exon
GTATAGATCTTATTGCTGCCTTTTATGGATGCCTGTATGCCGGCTGTGTACCAATTACAGTACGACCACCACACCCCCAGAACATCGCCACCACCCTGCCCACTGTGAAAATGATTGTGGAA
Seq C2 exon
GTGAGCCGATCGGCCTGTGTGATGACCACACAGATCATATCCAAGCTCCTTAAGTCAAAGGAGGCATCGGCTGCAGTTGATGTCAGGACGTGGCCTCCTGTTCTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'31-35,'31-33,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.5=100)
A:
PF0050123=AMP-binding=FE(8.2=100)
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGTCTTGAGCTCACTG
R:
CTGTGTCCAGAACAGGAGGCC
Band lengths:
236-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]