RnoEX6053846 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63762119-63764170:+
Coord C1 exon
chr17:63762119-63762242
Coord A exon
chr17:63762808-63762929
Coord C2 exon
chr17:63764059-63764170
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTCCTCTTGTATAGGAA
3' ss Score
10.65
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAACAATCGCAAATTCCTTGACGTGTGTTCAACTCCACAAGCGTGCAGAAAAGATAGCAGTGATGCTGATGGAGAGGGGCCACCTGCAGGACGGAGACCACGTGGCATTAGTCTACCCTCCAG
Seq A exon
GAATAGACCTTATTGCTGCATTTTATGGTTGCCTGTATGCGGGCTGTGTGCCAATCACCGTGCGACCTCCACATCCACAGAACATTGCAACAACATTGCCTACAGTCAAGATGATCGTAGAG
Seq C2 exon
GTGAGTCGGTCTGCTTGTCTCATGACAACACAATTGATTTGTAAACTGCTTCGGTCCAGAGAGGCAGCAGCAGCTGTAGATGTCAGGACATGGCCCCTCATACTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'45-41,'45-40,46-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAATCGCAAATTCCTTGACG
R:
GTGTCCAGTATGAGGGGCCAT
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]